Imaging Research Refinery Tutorial!

Requirements

Using tutorial machine in the cloud

• Remote Desktop Client

• SSH client (mobaXterm)

Using you own device

• Remote Desktop Client

• SSH client (windows: mobaXterm)

• docker

• docker-compose

• docker-machine if running Mac OS/Windows

• git

Contents:

• Introduction
• Deployment and configuration
• XNAT
• Anonymization, Transportation & Storage
• Tracking Experiments
• Managing Tasks
• Manual Annotation & Inspection
• Automated procesing using fastr
  • The Network
• Assignments
  • FastR automated processing
  • Creating a ViewR Layout
• Known issues

Indices and tables

• Index

• Module Index

• Search Page